Skip to contents
-
SHIP
- SHrinkage covariance Incorporating Prior knowledge
-
build.target()
- Creating a covariance target, optionally by using information from KEGG pathways.
-
expl
- Small example extracted from a microarray data set.
-
shrink.estim()
- Shrinkage estimator of the covariance matrix, given a data set and a covariance target.
-
targetCor()
- Computation of the target Cor.
-
targetD()
- Computation of the diagonal target D ('diagonal, unequal variances').
-
targetF()
- Computation of target F ('constant correlation model').
-
targetG()
- Computation of target G ('knowledge-based constant correlation model').
-
targetGpos()
- Computation of the target Gpos.
-
targetGstar()
- Computation of the target Gstar.